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java.lang.Object | +--BestTreeMP
This class keeps the best tree information in the MP algorithm.
Constructor Summary | |
BestTreeMP()
Constructs a default best tree object in the MP algorithm |
Method Summary | |
int[][] |
getAllNumOfSubs()
Gets the number of substitutions table in all sites in the MP algorithm. |
int |
getAllSitesSubs()
Gets the total number of substitutions in all sites in the MP algorithm. |
java.lang.String[][] |
getBestCharacters()
Gets the character sequences for all nodes in the best tree in the MP algorithm. |
java.util.Vector |
getBestInterNodes()
Gets the interior nodes in the best tree in the MP algorithm. |
TreeDisplay |
getBestTreeDisplay()
Gets the tree drawing object in the best tree in the MP algorithm. |
javax.swing.JFrame |
getBestTreeFrame()
Gets the best tree window in the MP algorithm. |
void |
setAllNumOfSubs(int[][] allNumOfSubsOthers)
Sets the total number of substitutions in all sites in the MP algorithm. |
void |
setBestCharacters(java.lang.String[][] bestCharactersOthers)
Sets the character sequences for all nodes in the best tree in the MP algorithm. |
void |
setBestInterNodes(java.util.Vector bestInterNodesOthers)
Sets the interior nodes in the best tree in the MP algorithm. |
void |
setBestTreeDisplay(TreeDisplay bestTreeDisplayOthers)
Sets the tree drawing object in the best tree in the MP algorithm. |
void |
setBestTreeFrame(javax.swing.JFrame bestTreeFrameOthers)
Sets the best tree window in the MP algorithm. |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
public BestTreeMP()
Method Detail |
public int getAllSitesSubs()
public int[][] getAllNumOfSubs()
public java.util.Vector getBestInterNodes()
public java.lang.String[][] getBestCharacters()
public TreeDisplay getBestTreeDisplay()
public javax.swing.JFrame getBestTreeFrame()
public void setAllNumOfSubs(int[][] allNumOfSubsOthers)
allNumOfSubsOthers
- the total number of substitutions in all sites in the MP algorithmpublic void setBestInterNodes(java.util.Vector bestInterNodesOthers)
bestInterNodesOthers
- the interior nodes in the best tree in the MP algorithmpublic void setBestCharacters(java.lang.String[][] bestCharactersOthers)
bestCharactersOthers
- the character sequences for all nodes in the best tree in the MP algorithmpublic void setBestTreeDisplay(TreeDisplay bestTreeDisplayOthers)
bestTreeDisplayOthers
- the tree drawing object in the best tree in the MP algorithmpublic void setBestTreeFrame(javax.swing.JFrame bestTreeFrameOthers)
bestTreeFrameOthers
- the best tree window in the MP algorithm
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