>HIV1_ELI_gag
GARASVLSGGKLDKWEKIRLRPGGKKKYRLKHIVWASRELERYALNPGLLETSEGCKQ
IIGQLQPAIQTGTEELRSLYNTVATLYCVHKGIDVKDTKEALEKMEEEQNKSKKKAQQ
AAADTGNNSQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVIEEKAFSPEVIPMFSAL
SEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRG
SDIAGTTSTLQEQIAWMTSNPPIPVGEIYKRWIIVGLNKIVRMYSPVSILDIRQGPKE
PFRDYVDRFYKTLRAEQASQDVKNWMTETLLVQNANPDCKTILKALGPQATLEEMMTA
CQGVGGPSHKARVLAEAMSQATNSVTTAMMQRGNFKGPRKIIKCFNCGKEGHIAKNCR
APRKKGCWRCGKEGHQLKDCTERQANFLGRIWPSHKGRPGNFLQSRPEPTAPPAESFG
FGEEITPSQKQEQKDKELYPLTSLKSLFGNDPLSQ

>HIV1_BRU_gag
GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQ
ILGQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQ
AAADTGHSSQVSQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSAL
SEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRG
SDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKE
PFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTA
CQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKIVKCFNCGKEGHIARNCRA
PRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSYKGRPGNFLQSRPEPTAPPFLQSRP
EPTAPPEESFRSGVETTTPSQKQEPIDKELYPLTSLRSLFGNDPSSQ

>HIV1_MAL_gag
GARASVLSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFALNPGLLETGEGCQQ
IMEQLQSTLKTGSEEIKSLYNTVATLYCVHQRIDVKDTKEALDKIEEIQNKSRQKTQQ
AAAAQQAAAATKNSSSVSQNYPIVQNAQGQMIHQAISPRTLNAWVKVIEEKAFSPEVI
PMFSALSEGATPQDLNMMLNIVGGHQAAMQMLKDTINEEAADWDRVHPVHAGPIPPGQ
MREPRGSDIAGTTSTLQEQIGWMTSNPPIPVGDIYKRWIILGLNKIVRMYSPVSILDI
RQGPKEPFRDYVDRFFKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPGATL
EEMMTACQGVGGPSHKARVLAEAMSQATNSTAAIMMQRGNFKGQKRIKCFNCGKEGHL
ARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPP
AESFGFGEEIKPSQKQEQKDKELYPLASLKSLFGNDQLSQ

>HIV1_NDK_gag
GARASVLSGGKLDTWERIRLRPGGKKKYALKHLIWASRELERFTLNPGLLETSEGCKQ
IIGQLQPSIQTGSEEIRSLYNTVATLYCVHERIEVKDTKEAVEKMEEEQNKSKKKTQQ
AAADSSQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVIEEKAFSPEVIPMFSALSEG
ATPQDLNTMLNTVGGHQAAMQMLKETINDEAAEWDRLHPVHAGPVAPGQMREPRGSDI
AGTTSTLQEQIAWMTSNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFR
DYVDRFYKTLRAEQASQDVKNWMTETLLVQNANPDCKTILKALGPQATLEEMMTACQG
VGGPGHKARVLAEAMSQVTGSATAVMMQRGNFKGPRKSIKCFNCGKEGHTAKNCRAPR
KKGCWKCGREGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPAESFGFGE
EITPSQKQEQKDKELYPLASLKSLFGNDPSSQ

>HIV2_D205_gag
MGARGSVLSGKKTDELEKVRLRPGGKKKYMLKHVVWAVNELDRFGLAESLLESKEGCQ
KILKVLAPLVPTGSENLKSLFNIVCVIFCLHAEEKVKDTEEAKKIAQRHLAADTEKMP
ATNKPTAPPSGGNYPVQQLAGNYVHLPLSPRTLNAWVKLVEEKKFGAEVVPGFQALSE
GCTPYDINQMLNCVGEHQAAMQIIREIINEEAADWDQQHPSPGPMPAGQLRDPRGSDI
AGTTSTVEEQIQWMYRAQNPVPVGNIYRRWIQLGLQKCVRMYNPTNILDIKQGPKEPF
QSYVDRFYKSLRAEQTDPAVKNWMTQTLLIQNANPDCKLVLKGLGMNPTLEEMLTACQ
GIGGPGQKARLMAEALKEALTPAPIPFAAVQQKAGKRGTVTCWNCGKQGHTARQCRAP
RRQGCWKCGKTGHIMSKCPERQAGFLGLGPWGKKPRNFPMTQVPQGVTPSAPPMNPAE
GMTPRGATPSAPPADPAVEMLKSYMQMGRQQRESRERPYKEVTEDLLHLNSLFGEDQ

>HIV2_ROD_gag
MGARNSVLRGKKADELERIRLRPGGKKKYRLKHIVWAANKLDRFGLAESLLESKEGCQ
KILTVLDPMVPTGSENLKSLFNTVCVIWCIHAEEKVKDTEGAKQIVRRHLVAETGTAE
KMPSTSRPTAPSSEKGGNYPVQHVGGNYTHIPLSPRTLNAWVKLVEEKKFGAEVVPGF
QALSEGCTPYDINQMLNCVGDHQAAMQIIREIINEEAAEWDVQHPIPGPLPAGQLREP
RGSDIAGTTSTVEEQIQWMFRPQNPVPVGNIYRRWIQIGLQKCVRMYNPTNILDIKQG
PKEPFQSYVDRFYKSLRAEQTDPAVKNWMTQTLLVQNANPDCKLVLKGLGMNPTLEEM
LTACQGVGGPGQKARLMAEALKEVIGPAPIPFAAAQQRKAFKCWNCGKEGHSARQCRA
PRRQGCWKCGKPGHIMTNCPDRQAGFLGLGPWGKKPRNFPVAQVPQGLTPTAPPVDPA
VDLLEKYMQQGKRQREQRERPYKEVTEDLLHLEQGETPYREPPTEDLLHLNSLFGKDQ

>HIV2_ST_gag
MGARNSVLRGKKADELEKIRLRPGGKKKYRLKHIVWAANELDRFGLAESLLESKEGCQ
KILTVLDPLVPTGSENLKSLFNTVCVIWCIHAEEKAKDTEEAKQKVQRHLVAETKTTE
KMPSTSRPTAPPSGNGGNFPVQQVAGNYTHVPLSPRTLNAWVKLVEEKKFGAEVVPGF
QALSEGCTPYDINQMLNCVGDHQAAMQIIREIINEEAADWDAQHPIPGPLPAGQLREP
RGSDIAGTTSTVEEQIQWMFRPQNPVPVGSIYRRWIQIGLQKCVRMYNPTNILDIKQG
PKEPFQSYVDRFYKSLRAEQTDPAVKNWMTQTLLVQNANPDCKLVLKGLGINPTLEEM
LTACQGVGGPGQKARLMAEALKEAMAPAPIPFAAAQQRRTIKCWNCGKEGHSARQCRA
PRRQGCWKCGKAGHIMAKCPERQAGFLGLGPWGKKPRNFPVAQIPQGLTPTAPPIDPV
EDLLEKYMQQGKRQREQRERPYKEVTEDFLQLEKQETPCRETTEDLLHLNSLFGKDQ

>HIV2_UCI_gag
MGARSSVLSGKKTDELEKVRLRPGGKKRYCLKHIIWAVNELDRFGLAESLLESKEGCH
KILTVLAPLVPTGSENLKSLFNTVCVIYCLHAEEKVKDTEEAKKIAQRHLAADTEKMP
ATSRPTAPPSGGNYPVQQIAGNYVHMPLSPRTLNAWVKLVEEKKFGAEVVPGFQALSE
GCTPYDINQMLNCVGDHQAAMQIIREIINEEAADWDQQHPIPGPLPAGQLRDPRGSDI
AGTTSTVEEQIQWMYRAQNPVPVGNIYRRWIQIGLQKCVRMYNPTNILDIKQGPKEPF
QSYVDRFYKSLRAEQTDPAVKNWMTQTLLIQNANPDCKLVLKGLGMNPTLEEMLTACQ
GIGGPGQKARLMAEALKEALTPAPIPFAAAQQKAGKRGTVTCWNCGKVGHTAKQCRAP
RRQGCWKCGKQGHIMSKCPERQAGFLGLGPWGKKPRNFPMTQVPQGVTPSAPPMDPAE
GMTPRGATPSAPPADPAVEMLKSYMKMGRQQRESRERPYKEVTEDLLHLNSLFGEDQ

>SIV_Mm251_gag
MGARNAVLSGKKADELEKIRLRPGGKKKYMLKHVVWAANELDRFGLAESLLENKEGCQ
KILSVLAPLVPTGSENLKSLYNTVCVIWCIHAEEKVKHTEEAKQIVQRHLVVETGTAE
TMPKTSRPTAPSSGRGGNYPVQQIGGNYVHLPLSPRTLNAWVKLIEEKKFGAEVVPGF
QALSEGCTPYDINQMLNCVGDHQAAMQIIRDIINEEAADWDLQHPQPAPQQGQLREPS
GSDIAGTTSSVDEQIQWMYRQQNPIPVGNIYRRWIQLRLQKCVRMYNPINILDVKQRP
KEPFQSYVDRFYKSLRAEQTDAAVKNWMTQTLLIQNANPDCKLVLKGLGVNPTLEEML
TACQGVGGPGQKARLMAEALKEALRPVPTPFAAAQQRGPRKPIKCWNCGKEGHSARQC
RAPRRQRCWKCGKMDHVMAKCPDRQAGFLGLGPWGKKPRNFPMAQVHQGLTPTAPPED
PAVDLLKNYMQLGKQQRESREKPYKEVTEDLLHLNSLFGGDQ

>SIV_CPZ_gag
MGARASVLTGGKLDRWEKVRLRPGGRKRYMMKHLVWASRELERFACDPGLMESKEGCT
KLLQQLEPALKTGSEGLRSLFNTLAVLWCIHSDITVEDTQKALEQLKRHHGEQQSKTE
SNSGSREGGASQGASASAGISGNYPLVQNAQGQMVHQAISPRTLNAWVKVVEEKAFSP
EVIPMFSALSEGALPQDVNTMLNAVGGHQGAMQVLKEVINEEAAEWDRLHPTHAGPIA
PGQLREPRGSDIAGTTSTLQEQIGWTTANPPIPVGDVYRRWVILGLNKVVRMYCPVSI
LDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTDTLLVQNANPDCKQILKALGPG
ATLEEMMTACQGVGGPSHKARVLAEAMSMVQNQGRADVFFQKGQGAGPKRKIKCFNCG
KEGHLARNCKAPRRKGCWRCGQEGHQMKDCTGRQVNFLGKGWPSRSGRPGNFVQNRTE
PTAPPIESYGYQEEEKSQEKKEGESSLYPPTSLKSLFGSDPSSQ

>SIV_AGM_gag
MGGGHSALSGRSLDTFEKIRLRPNGKKKYQIKHLIWAGKEMERF
GLHEKLLETKEGCQKIIEVLTPLEPTGSEGLKALFNLCCVIWCIHAEQKVKDTEEAVV
TVKQHYHLVDKNEKAAKKKNETTAPPGGESRNYPVVNQNNAWVHQPLSPRTLNAWVKC
VEEKRWGAEVVPMFQALSEGCLSYDVNQMLNVIGDHQGALQILKEVINEEAAEWDRTH
RPPAGPLPAGQLRDPTGSDIAGTTSSIQEQIEWTFNANPRIDVGAQYRKWVILGLQKV
VQMYNPQKVLDIRQGPKEPFQDYVDRFYKALRAEQAPQDVKNWMTQTLLIQNANPDCK
LILKGLGMNPTLEEMLIACQGVGGPQHKAKLMVEMMSNGQNMVQVGPQKKGPRGPLKC
FNCGKFGHMQRECKAPRQIKCFKCGKIGHMAKDCKNGQANFLGYGHWGGAKPRNFVQY
RGDTVGLEPTAPPMETAYDPAKKLLQQYAEKGQRLREEREQTRKQKEKEVEDVSLSSL
FGGDQ

>SIV_SMM_gag
MGARNSVLSGKEADELEKVRLRPNGKKKYMLKHVVWAANELDRF
GLAESLLDNKEGCQKILSVLAPLVPTGSENLKSLYNTVCVIWCIHAEEKVKHTEEAKQ
IVQRHLVVETGTADRMPATSRPTAPPSGRGGNYPVQQVGGNYVHLPLSPRTLNAWVKL
VEEKKFGAEVVPGFQALSEGCTPYDINQMLNCVGEHQAAMQIIREIINEEAADWDLQH
PQPGPLPAGQLREPRGSDIAGTTSTVDEQIQWMYRQQNPIPVGNIYRRWIQLGLQKCV
RMYNPTNILDVKQGPKEPFQSYVDRFYKSLRAEQTDPAVKNWMTQTLLIQNANPDCKL
VLKGLGMNPTLEEMLTACQGVGGPGQKARLMAEALKEALRPDQLPFAAVQQKGQRKTI
KCWNCGKEGHSAKQCRAPRRQGCWKCGKTGHVMAKCPERQAGFLGLGPWGKKPRNFPM
AQMPQGLIPTAPPEDPAVDLLKNYMKMGRKQRENRERPYKEVTEDLLHLNSLFGEDQ